2020-10-09

When?

Friday, 9 October 2020 (moved from 2 October due to Uppsala Transposon meeting)

10.00 - 11.00 h

Where?

Zoom, link shared via slack & mailing list

https://uu-se.zoom.us/j/66286948479

Which paper are we discussing?

Fiddes IT, Armstrong J, Diekhans M, Nachtweide S, Kronenberg ZN, Underwood JG, Gordon D, Earl D, Keane T, Eichler EE, Haussler D, Stanke M, Paten B.

Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation. Genome Res. 2018 Jul;28(7):1029-1038.

doi: 10.1101/gr.233460.117. Epub 2018 Jun 8. PMID: 29884752; PMCID: PMC6028123.

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6028123/

Who is presenting?

Tomas Larsson

Notes

I will use the above paper as a starting point to discuss comparative annotation. Will add some info on other tools as well.