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Hi, on Monday June 3 I will present "Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data". This paper presents one of the first applications of demographic inference on whole-genome resequencing data. The purpose of choosing this paper is to demonstrate the use of coalescent modelling for demographic inference. I will briefly discuss the article itself and then devote attention to the more general problem of simulating DNA sequences, with a focus on the coalescent process. I plan to upload a Jupyter notebook for your benefit, hopefully before Monday...
Notebook
Here is the notebook corresponding to the version of the presentation. I will however continue modifying this document. To keep track of recent changes, please use the nonmodeljc Bitbucket repository.
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The first JC after summer will be on Monday, 2 September