2021-12-03

When?

Friday, 3 December 2021

10.00 - 11.00 h

Where?

https://stockholmuniversity.zoom.us/j/62208705509

Which paper are we discussing?

The barnacle genome! Balanus improvisus

The genome is highly heterozygous, and we have been trying to "haploidize" it, with some success we think.

However, new data from a related species Amphibalanus amphitrite has been recently made available (https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Amphibalanus_amphitrite/100/). 

A. amphitrite:

• 807 Mb
• ~31,000 annotated genes
• BUSCO 4 (run on longest proteins) C:96.9%[S:31.2%,D:65.7%],F:0.8%,M:2.3%,n:1013

our "haploid" B. improvisus:

• 821 Mb
• ~26,000 annotated genes
• BUSCO 3 (run on genome) C:94.9%[S:86.0%,D:8.9%],F:1.9%,M:3.2%,n:1066
• BUSCO 5 (run on genome) C:85.2%[S:79.2%,D:6.0%],F:8.8%,M:6.0%,n:1013
• BUSCO 5 (run on longest proteins) C:83.5%[S:78.9%,D:4.6%],F:7.0%,M:9.5%,n:1013

our "diploid" B. improvisus:

• 1,293 Gb
• ~43,000 annotated genes
• BUSCO 3 (run on genome) C:96.3%[S:23.5%,D:72.8%],F:0.8%,M:2.9%,n:1066
• BUSCO 5 (run on genome) C:94.9%[S:17.3%,D:77.6%],F:2.9%,M:2.2%,n:1013

Who is presenting?

Magnus & Estelle

Notes

This is an ongoing NBIS-LTS project